Light sheet microscope for fast-turnaround tumor biopsy
Introduction
This page presents a case study on rapid throughput in microscopy.
Links
Overview
Cloud
- Increase output rate on the computer connected to the microscope camera
- Increase the bandwidth in the telco closet to the vertical pipe to the basement
- Increase the bandwidth on the basement switch to the campus backbone
- Test the link
- Test the link from Health Sciences (relocate the microscope)
- Supposing the microscope-to-AWS-S3 link is working: Get the processing running quickly
Benchmarks
- With Ian Cote
- Networking notes for AWS
- Notice in the AWS Console EC2 Launch Instance choice table includes a Network Performance column
- Using a lightweight machine (t2micro) we get MB per second as expected
- Using a c4.8xlarge with ‘10GBit’ connection: (1.91, 0.65, 1.14 Gbps, quite ow
- Via the NON-IPS path over 2 x 10G campus inet pipe: (1.47, 2.53, 2.44 Gbps)
- To S3…